PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g076590.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 491aa    MW: 54986.7 Da    PI: 4.9503
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g076590.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.92.1e-35261172102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws + +sfv++d+ efak++LpkyFkhsnf+SFvRQLn+YgF+kv ++          w+F+++ F +g+k+
  Sopim08g076590.0.1  26 FLMKTYDMVDDPSTDKIVSWSPTDSSFVIWDPPEFAKQLLPKYFKHSNFSSFVRQLNTYGFRKVGSDL---------WKFSNDGFIRGQKH 107
                         9********************999****************************************9887.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Sopim08g076590.0.1 108 LLKNISRRKP 117
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3918110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-3622115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDAGGGSPVP EITPAPMPSS NAVPPFLMKT YDMVDDPSTD KIVSWSPTDS SFVIWDPPEF  60
AKQLLPKYFK HSNFSSFVRQ LNTYGFRKVG SDLWKFSNDG FIRGQKHLLK NISRRKPAHG  120
QQQQQQLHSQ SASVGACVEV GNFGLEKEVE WLKRDKNVLM QELVKLRQHQ QTTDNQMQNM  180
VQNLQIMEQR QQQMMSFLAK AVNSPGFFAQ FVQQQNDNNK RKMEGKKKRR IRQDFPSDDH  240
SVRPADGQLV KYHPIMNETA KGMLTQITKL DSSPRLENFS NSPESPPIGD AFDGRSNSRI  300
SGVTLQEVSP AFSQPFASTT SAIAGQSSLS ANIQFSESSS PIGAQNLPPI VPFSSDMIMP  360
MPSQLQEIVP ENNMDINGTE RGNDSFMDPT LWGNGELPLE NDIFPPDLQI KWESALVDDI  420
GEPPTVADPS WEKFLQSLYP PTETEEMGSV ETENDKTTET ELLGNGWYNV QHMEHLTEQM  480
GLLTSNTKKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27511510129Heat shock factor protein 1
5d5v_B3e-27511510129Heat shock factor protein 1
5d5v_D3e-27511510129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229KKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0108020.0AP010802.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0015J19, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325565.10.0PREDICTED: heat shock factor protein HSF8-like
RefseqXP_010325566.10.0PREDICTED: heat shock factor protein HSF8-like
RefseqXP_010325567.10.0PREDICTED: heat shock factor protein HSF8-like
SwissprotQ401520.0HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLK4CN210.0K4CN21_SOLLC; Uncharacterized protein
STRINGSolyc08g076590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64131931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-127heat shock factor 3